public class SAMRecordQueryNameComparator extends Object implements SAMRecordComparator, Serializable
Constructor and Description |
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SAMRecordQueryNameComparator() |
Modifier and Type | Method and Description |
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int |
compare(SAMRecord samRecord1,
SAMRecord samRecord2) |
static int |
compareReadNames(String readName1,
String readName2)
Encapsulate algorithm for comparing read names in queryname-sorted file, since there have been
conversations about changing the behavior.
|
int |
fileOrderCompare(SAMRecord samRecord1,
SAMRecord samRecord2)
Less stringent compare method than the regular compare.
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
comparing, comparing, comparingDouble, comparingInt, comparingLong, equals, naturalOrder, nullsFirst, nullsLast, reversed, reverseOrder, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong
public int compare(SAMRecord samRecord1, SAMRecord samRecord2)
compare
in interface Comparator<SAMRecord>
public int fileOrderCompare(SAMRecord samRecord1, SAMRecord samRecord2)
fileOrderCompare
in interface SAMRecordComparator