public class SAMValidationError extends Object implements Serializable
Modifier and Type | Class and Description |
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static class |
SAMValidationError.Severity |
static class |
SAMValidationError.Type |
Modifier and Type | Field and Description |
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static long |
serialVersionUID |
Constructor and Description |
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SAMValidationError(SAMValidationError.Type type,
String message,
String readName)
Construct a SAMValidationError with unknown record number.
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SAMValidationError(SAMValidationError.Type type,
String message,
String readName,
long recordNumber)
Construct a SAMValidationError with possibly-known record number.
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Modifier and Type | Method and Description |
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String |
getMessage() |
String |
getReadName()
may be null
|
long |
getRecordNumber()
1-based.
|
String |
getSource() |
SAMValidationError.Type |
getType() |
void |
setRecordNumber(long recordNumber) |
void |
setSource(String source) |
String |
toString() |
public static final long serialVersionUID
public SAMValidationError(SAMValidationError.Type type, String message, String readName)
type
- message
- readName
- May be null if readName is not known.public SAMValidationError(SAMValidationError.Type type, String message, String readName, long recordNumber)
type
- message
- readName
- May be null if readName is not known.recordNumber
- Position of the record in the SAM file it has been read from. -1 if not known.public SAMValidationError.Type getType()
public String getMessage()
public String getReadName()
public long getRecordNumber()
public void setRecordNumber(long recordNumber)
public String getSource()
public void setSource(String source)