public class SAMSortOrderChecker extends Object
Constructor and Description |
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SAMSortOrderChecker(SAMFileHeader.SortOrder sortOrder) |
Modifier and Type | Method and Description |
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SAMRecord |
getPreviousRecord() |
String |
getSortKey(SAMRecord rec)
Return the sort key used for the given sort order.
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boolean |
isSorted(SAMRecord rec)
Check if given SAMRecord violates sort order relative to previous SAMRecord.
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public SAMSortOrderChecker(SAMFileHeader.SortOrder sortOrder)